University of Kentucky College of Arts & Sciences

Faculty & Research

Bruce O'Hara

Bruce O'Hara
Associate Professor
Ph.D. Johns Hopkins Univ., 1988

Email: bohara@email.uky.edu
Phone: (859) 257-2805
Office: 334A TH Morgan Bldg.
Graduate Training: MCB Program

Research

Sleep & Circadian Rhythms

 

My research addresses questions related to sleep and circadian rhythms.  The research ranges from molecular and genetic approaches to behavioral studies in mice and humans.  Great progress has been made recently in understanding fundamental aspects of circadian rhythms, but many aspects of sleep are poorly understood.  Although sleep occupies approximately one third of our lives, we still cannot answer the basic question of why we sleep.  It now appears that most animals have some form of sleep, and birds and mammals generally have two very different kinds of sleep – Rapid-Eye-Movement (REM) sleep and non-REM sleep that may serve different or complementary functions.  In addition to fundamental questions about sleep function and sleep regulation, sleep is also of great medical and societal importance.  Sleep disturbances afflict approximately 75 million people in the United States alone, and even normal sleepers often get insufficient sleep due to lifestyle factors that can result in serious accidents, poor performance, lowered quality of life, and even grouchiness.  Clearly, something about the brain requires sleep and, in our view, genetic approaches in mice provide one of the best opportunities for a better understanding of sleep.   

Mice are an excellent model organism for genetic studies because there is a wide diversity of inbred strains.  Members of each individual inbred strain are genetically identical, like identical twins in humans, but among different strains there are many different alleles of each gene that contribute to physiological and behavioral differences.  We are currently investigating differences in gene expression among these strains for genes that we believe are critical for sleep regulation or sleep function.  We also monitor different strains for behavioral differences ranging from total sleep time, to their daily activity patterns.  For example, we have one mouse strain called CAST/EiJ that is similar to humans with the clinical condition called Advanced Sleep Phase Syndrome, and wake up much earlier than normal.  We have recently identified at least one chromosomal region (or Quantitative Trait Locus) that contributes to this trait, and are now trying to find which of the approximately one hundred genes in this region is the critical one. 

A major limitation in all studies of sleep in mice, or any mammal, is the difficulty of performing EEG/EMG analyses.  In mice, this requires extensive surgery, recovery, cabling of animals, and considerable time for signal analyses.   Therefore, we developed a non-invasive, high-throughput alternative using a piezoelectric film attached to the floor of a mouse cage, and then developed signal processing algorithms to score sleep and wake in real time.  This work is being done in collaboration with Prof. Kevin Donohue in Engineering.  We currently have our system screening mice at Oak Ridge National Laboratory and other locations to take advantage of the extensive diversity of mice available at these locations, including a large cross that may revolutionize complex genetic studies, called the Collaborative Cross.   

In addition to our studies in mice, we are also studying various aspects of sleep, meditation and performance in people, such as whether meditation might provide some of the restoration we normally associate with sleep.  We are using a well-validated psychomotor vigilance test that accurately reflects underlying sleepiness.  Our data thus far suggest meditation can indeed boost performance, and in a way that appears to compensate or pay-off sleep debt. 


 

 

Selected Publications

 

  • O'Hara, B.F., F.L. Watson, R. Andretic, S.W. Wiler, K.A. Young, L. Bitting, H.C. Heller, T.S. Kilduff, Daily variation in CNS gene expression in nocturnal vs. diurnal rodents and in the developing rat brain, Mol. Brain Res. 48:73-86 (1997).
  • O'Hara, B.F., D.M. Edgar, V.H. Cao, S.W. Wiler, H.C. Heller, T.S. Kilduff, J.D. Miller, Nicotine and nicotinic receptors in the circadian system, Psychoneuroendocrin. 23:161-173 (1998).
  • Kilduff, T.S., C. Vugrinic, S.L. Lee, J.D. Milbrandt, J.D. Mikkelsen, B.F. O'Hara, H.C. Heller, Characterization of the circadian system of NGFI-A and NGFI-A/NGFI-B deficient mice, J. Biol. Rhythms 13:347-357 (1998).
  • O’Hara, B.F., E.S. Macdonald, D. Clegg, S.W. Wiler, R. Andretic, V.H. Cao, J.D. Miller, H.C. Heller, T.S. Kilduff.  Developmental changes in nicotinic receptor mRNAs and responses to nicotine in the suprachiasmatic nucleus and other brain regions, Mol. Brain Res. 66:71-82 (1999).
  • O'Hara, B.F., F.L. Watson, H.K. Srere, H. Kumar, S.W. Wiler, S.K. Welch, L. Bitting, H.C. Heller, T.S. Kilduff, Gene expression in the brain across the hibernation cycle, J. Neurosci.  19:3781-3790 (1999).
  • O'Hara, B.F., E. Mignot, Genetics of sleep and its disorders.  In: Genetic Influences on Neural and Behavioral Functions.    D.W. Pfaff, W.H. Berretinni, T.H. Joh, S.C. Maxson (Eds.).  CRC Press, Inc., Boca Raton, FL, pp. 307-326 (2000). 
  • Frank, M.R., H. Srere, C. Ledezma, B. O’Hara, H.C. Heller, Prenatal nicotine alters vigilance states and AchR gene expression in the neonatal rat:  implications for SIDS, Am. J. Physiol. 280:R1134-R1140 (2001). 
  • Belousov, A.B., B.F. O’Hara, J.V. Denisova, Acetylcholine becomes the major excitatory neurotransmitter in the hypothalamus In Vitro in the absence of glutamate excitation, J. Neurosci. 21:2015-2027 (2001). 
  • Wisor, J.P., B.F. O’Hara, A. Terao, C.P. Selby, T.S. Kilduff, A. Sancar, D.M. Edgar, P. Franken.  A role for cryptochromes in sleep regulation, BMC Neurosci. 3:20 (2002).
  • Ruby, N.F., T.J. Brennan, X.M. Xie, V. Cao, P. Franken, H.C. Heller, B.F. O’Hara.  The role of melanopsin in circadian responses to light, SCIENCE 298: 2211-2213 (2002).  
  • Biola O, Angel JM, Avner P, Bachmanov AA, Belknap JK, Bennett B, Blankenhorn EP, Blizard DA, Bolivar V, Brockmann GA, Buck KJ, Bureau JF, Casley WL, Chesler EJ, Cheverud JM, Churchill GA, Cook M, Crabbe JC, Crusio WE, Darvasi A, de Haan G, Dermant P, Doerge RW, Elliot RW, Farber CR, Flaherty L, Flint J, Gershenfeld H, Gibson JP, Gu J, Gu W, Himmelbauer H, Hitzemann R, Hsu HC, Hunter K, Iraqi FF, Jansen RC, Johnson TE, Jones BC, Kempermann G, Lammert F, Lu L, Manly KF, Matthews DB, Medrano JF, Mehrabian M, Mittlemann G, Mock BA, Mogil JS, Montagutelli X, Morahan G, Mountz JD, Nagase H, Nowakowski RS, O'Hara BF, Osadchuk AV, Paigen B, Palmer AA, Peirce JL, Pomp D, Rosemann M, Rosen GD, Schalkwyk LC, Seltzer Z, Settle S, Shimomura K, Shou S, Sikela JM, Siracusa LD, Spearow JL, Teuscher C, Threadgill DW, Toth LA, Toye AA, Vadasz C, Van Zant G, Wakeland E, Williams RW, Zhang HG, Zou F; Complex Trait Consortium.
  • The nature and identification of quantitative trait loci: a community's view.
  • Nature Rev Genet. 4:911-916 (2003). 
  • Barakat, MT, B.F. O’Hara, VH Cao, JE Larkin, HC Heller, NF Ruby.  Light pulses do not induce per1 or c-fos in the SCN of hamsters that fail to re-entrain to the photocycle. 
  • J. Biol. Rhythms. 19:287-96 (2004). 
  • Hairston IS, Peyron C, Denning DP, Ruby NF, Flores J, Sapolsky RM, Heller HC, O'Hara BF.  Sleep deprivation effects on growth factor expression in neonatal rats: A potential role for BDNF in the mediation of delta power.  J. Neurophysiol. 91:1586-95 (2004). 
  • Churchill GA, Airey DC, Allayee H, Angel JM, Attie AD, Beatty J, Beavis WD, Belknap JK, Bennett B, Berrettini W, Bleich A, Bogue M, Broman KW, Buck KJ, Buckler E, Burmeister M, Chesler EJ, Cheverud JM, Clapcote S, Cook MN, Cox RD, Crabbe JC, Crusio WE, Darvasi A, Deschepper CF, Doerge RW, Farber CR, Forejt J, Gaile D, Garlow SJ, Geiger H, Gershenfeld H, Gordon T, Gu J, Gu W, de Haan G, Hayes NL, Heller C, Himmelbauer H, Hitzemann R, Hunter K, Hsu HC, Iraqi FA, Ivandic B, Jacob HJ, Jansen RC, Jepsen KJ, Johnson DK, Johnson TE, Kempermann G, Kendziorski C, Kotb M, Kooy RF, Llamas B, Lammert F, Lassalle JM, Lowenstein PR, Lu L, Lusis A, Manly KF, Marcucio R, Matthews D, Medrano JF, Miller DR, Mittleman G, Mock BA, Mogil JS, Montagutelli X, Morahan G, Morris DG, Mott R, Nadeau JH, Nagase H, Nowakowski RS, O'Hara BF, Osadchuk AV, Page GP, Paigen B, Paigen K, Palmer AA, Pan HJ, Peltonen-Palotie L, Peirce J, Pomp D, Pravenec M, Prows DR, Qi Z, Reeves RH, Roder J, Rosen GD, Schadt EE, Schalkwyk LC, Seltzer Z, Shimomura K, Shou S, Sillanpaa MJ, Siracusa LD, Snoeck HW, Spearow JL, Svenson K, Tarantino LM, Threadgill D, Toth LA, Valdar W, de Villena FP, Warden C, Whatley S, Williams RW, Wiltshire T, Yi N, Zhang D, Zhang M, Zou F; Complex Trait Consortium. 
  • The Collaborative Cross, a community resource for the genetic analysis of complex traits.
  • Nature Genet. 36:1133-1137 (2004). 
  • Xie X, Dumas T, Tang L, Brennan T, Reeder T, Thomas W, Klein RD, Flores J, O'Hara BF, Heller HC, Franken P.  Lack of the alanine-serine-cysteine transporter 1 causes tremors, seizures, and early postnatal death in mice.  Brain Res. 1052:212-21 (2005). 
  • Barakat, MT, BF O’Hara, VH Cao, HC Heller, NF Ruby.   Light induces c-fos and per1 expression in the suprachiasmatic nucleus of arrhythmic hamsters.  Am J Physiol Regul Integr Comp Physiol.  289:R1381-1386 (2005).   
  • Franken P, Dudley C, Estill SJ, Barakat M, Thomason R, O’Hara BF, McKnight SL.  NPAS2 as a transcriptional regulator of non-REM sleep:  Genotype and sex interactions.  Proc Natl Acad Sci USA, 103: 7118-7123 (2006). 
  • Flores, AE, JE Flores, H Deshpande, J Picazo, XM Xie, P Franken, HC Heller, DA Grahn, BF O’Hara.  Pattern recognition of sleep in rodents using piezoelectric signals generated by gross body movements.  IEEE transactions  in Biomedical Engineering, 54:225-233 (2007). 
  • O’Hara BF, J Ding, R Bernat, P Franken.  Genomic and Proteomic approaches towards an understanding of sleep.  Current Drug Targets – CNS and Neurological Disorders, 6:71-81 (2007). 
  • Wisor JP, M Striz, J DeVoss, GM Murphy, DM. Edgar, BF O’Hara.  A novel quantitative trait locus on mouse chromosome 18, "era1," modifies the entrainment of circadian rhythms, SLEEP 30:1255-1263 (2007).   
  • Franken P, R Thomason, HC Heller, BF O’Hara.  A non-circadian role for clock-genes in sleep homeostasis: A strain comparison, BMC Neuroscience 8:87 (2007).
  • Maret S, Dorsaz S, Gurcel L, Pradervand S, Petit B, Pfister C, Hagenbuchle O, O'Hara BF, Franken P, Tafti M.  Homer1a is a core brain molecular correlate of sleep loss.  Proc Natl Acad Sci USA. 104(50):20090-20095 (2007). 
  • Williams DG, KD Donohue, BF O'Hara.  Low-Frequency Amplifiers for PVDF Film Sensors, Proceeding of the IEEE, Southeastcon 2008,  pp. 75-79, 2008.
  • Shantilal S, KD Donohue, BF O’Hara.  SVM for automatic Rodent Sleep-Wake Classification, Proceeding of the IEEE, Southeastcon 2008, pp. 581-586, 2008.
  • Donohue KD, DC Medonza, ER Crane, BF O’Hara.  Assessment of a non-invasive high-throughput classifier for behaviors associated with sleep and wake in mice.  Biomed Engineering Online, 7(1):14 (pp. 1-14), 2008.

 
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